Variant report

Variant	rs13219119
Chromosome Location	chr6:81673943-81673944
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10485279	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10943761	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11752497	0.83[EUR][1000 genomes]
rs11752987	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11754785	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11754790	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11754791	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11754877	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11755475	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11755483	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11756967	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11757064	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11757076	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11757311	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11757821	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11759444	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11759508	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12662514	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13196051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13203762	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13203894	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13203901	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13216872	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13218092	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13219793	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13219816	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13219965	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13220122	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1596427	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17726819	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1935898	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2028718	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2028719	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34045818	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34121515	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34237038	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34481864	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34583708	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34614160	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34779000	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35711335	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35716568	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35829467	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55668248	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56083525	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56197259	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56322377	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56331944	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62424103	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62424105	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62424145	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62424146	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62425769	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62425770	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62425771	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62425776	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62426179	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66604649	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6911697	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6917015	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6917229	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6940302	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6940802	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71566995	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7742728	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7742869	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7743282	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7744562	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7746955	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7751304	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7754930	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7759912	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7760674	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7760771	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7760817	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7767338	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9294187	0.81[EUR][1000 genomes]
rs9352906	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886318	chr6:81447367-81769538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1032130	chr6:81572030-81722231	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2762604	chr6:81593275-81742093	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv428487	chr6:81607405-81742838	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv830709	chr6:81615127-81793247	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1033733	chr6:81641291-81728782	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv886319	chr6:81670720-81741457	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv886320	chr6:81670720-81960107	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81670800-81676000	Weak transcription	Dnd41	blood
2	chr6:81672600-81676200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:81672600-81677200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:81673600-81677200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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