Variant report

Variant	rs1935898
Chromosome Location	chr6:81683654-81683655
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10943761	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11752497	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11752987	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11754785	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11754790	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11754791	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11754877	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11755475	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11755483	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11756967	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11757064	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11757076	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11757311	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11757821	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11759444	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11759508	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12662514	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13196051	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13203762	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13203894	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13203901	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13216872	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13218092	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13219119	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13219793	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13219816	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13219965	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13220122	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1596427	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17726819	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2028718	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2028719	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34045818	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34121515	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34237038	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34481864	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34583708	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34614160	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34779000	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35711335	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35716568	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35829467	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55668248	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56083525	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56197259	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56322377	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56331944	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62424103	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62424105	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62424145	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62424146	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62425769	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62425770	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62425771	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62425776	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6911697	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6917015	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6917229	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6940302	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6940802	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71566995	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7742728	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7742869	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7743282	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7744562	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7746955	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7751304	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7754930	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7759912	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7760674	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7760771	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7760817	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7767338	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886318	chr6:81447367-81769538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1032130	chr6:81572030-81722231	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2762604	chr6:81593275-81742093	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv428487	chr6:81607405-81742838	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv830709	chr6:81615127-81793247	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1033733	chr6:81641291-81728782	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv886319	chr6:81670720-81741457	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv886320	chr6:81670720-81960107	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81678200-81683800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr6:81683400-81684200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:81683600-81684600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:81683600-81685000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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