Variant report

Variant	rs13219222
Chromosome Location	chr6:33891382-33891383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10947467	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11752328	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757618	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12525941	0.88[EUR][1000 genomes]
rs6925683	0.95[EUR][1000 genomes]
rs746504	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7747856	0.87[EUR][1000 genomes]
rs7748976	0.81[EUR][1000 genomes]
rs9348930	0.92[ASN][1000 genomes]
rs9366832	0.83[CHB][hapmap]
rs9368783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9368784	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3409018	chr6:33890574-33894172	Enhancers Bivalent Enhancer Weak transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33883800-33891400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:33885200-33891600	Weak transcription	Pancreas	Pancrea
3	chr6:33886600-33894600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:33889600-33891400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:33889600-33892400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:33889800-33891600	Weak transcription	Spleen	Spleen
7	chr6:33889800-33892400	Enhancers	Primary T cells fromperipheralblood	blood
8	chr6:33889800-33893200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:33890600-33892200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:33890600-33892600	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:33890600-33893400	Enhancers	Fetal Thymus	thymus
12	chr6:33890800-33891600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:33890800-33892000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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