Variant report

Variant	rs6925683
Chromosome Location	chr6:33894292-33894293
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10947467	0.92[EUR][1000 genomes]
rs11752328	0.97[EUR][1000 genomes]
rs11757618	0.96[EUR][1000 genomes]
rs12525941	0.87[EUR][1000 genomes]
rs13219222	0.95[EUR][1000 genomes]
rs746504	0.93[EUR][1000 genomes]
rs7747856	0.86[EUR][1000 genomes]
rs7748976	0.81[EUR][1000 genomes]
rs9368783	0.97[EUR][1000 genomes]
rs9368784	0.98[EUR][1000 genomes]
rs9380388	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33886600-33894600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:33892200-33895600	Enhancers	Brain Germinal Matrix	brain
3	chr6:33893000-33894400	Enhancers	Fetal Brain Female	brain
4	chr6:33893000-33895200	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:33893200-33897600	Weak transcription	Fetal Lung	lung
6	chr6:33893600-33895800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:33893800-33894600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:33894000-33894400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:33894000-33894600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:33894000-33895000	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:33894000-33895000	Weak transcription	Ovary	ovary
12	chr6:33894000-33895200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:33894000-33895400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:33894200-33895200	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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