Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:33887758..33891673-chr6:33891780..33895604,5	K562	blood:
2	chr6:33889301..33891295-chr6:33893336..33896618,3	MCF-7	breast:
3	chr6:33893477..33895597-chr6:33913163..33915930,2	K562	blood:
4	chr6:33893792..33896419-chr6:33908700..33911683,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ITPR3-1	chr6:33892111-33895408	ENSG00000233183

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10947467	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11752328	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11757618	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12525941	0.89[EUR][1000 genomes]
rs13219222	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6925683	0.98[EUR][1000 genomes]
rs746504	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7747856	0.88[EUR][1000 genomes]
rs7748976	0.82[EUR][1000 genomes]
rs9348930	0.87[ASN][1000 genomes]
rs9368783	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9380388	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33892200-33895600	Enhancers	Brain Germinal Matrix	brain
2	chr6:33893000-33895200	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:33893200-33897600	Weak transcription	Fetal Lung	lung
4	chr6:33893600-33895800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:33894000-33895200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:33894000-33895400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:33894200-33895200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:33894600-33895200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:33894600-33895400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr6:33894600-33895400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr6:33894600-33902600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:33894800-33895200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:33894800-33895200	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr6:33894800-33896000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:33895000-33895200	Enhancers	Fetal Muscle Leg	muscle
16	chr6:33895000-33895800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:33895000-33895800	Enhancers	HSMM	muscle
18	chr6:33895000-33896000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:33895000-33896000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:33895000-33896000	Enhancers	Ovary	ovary

Quick Search: