Variant report

Variant	rs1321998
Chromosome Location	chr1:185524672-185524673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185523762..185526492-chr1:185528261..185529807,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10911754	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11576129	0.84[EUR][1000 genomes]
rs11576884	0.80[EUR][1000 genomes]
rs11581960	0.80[EUR][1000 genomes]
rs11583193	0.80[EUR][1000 genomes]
rs11586588	0.83[EUR][1000 genomes]
rs11586605	0.87[EUR][1000 genomes]
rs12029108	0.91[EUR][1000 genomes]
rs12048982	0.80[EUR][1000 genomes]
rs12402146	0.80[EUR][1000 genomes]
rs12402607	0.80[EUR][1000 genomes]
rs1321999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295792	0.91[EUR][1000 genomes]
rs28776539	0.80[EUR][1000 genomes]
rs35495151	1.00[EUR][1000 genomes]
rs41453048	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56822355	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57836721	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58678353	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58848006	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701720	0.81[EUR][1000 genomes]
rs72726098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72727706	0.83[EUR][1000 genomes]
rs72727712	0.91[EUR][1000 genomes]
rs72727717	0.80[EUR][1000 genomes]
rs7518777	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185520800-185528800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:185521000-185533800	Weak transcription	Placenta	Placenta
3	chr1:185524400-185524800	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr1:185524400-185525000	Enhancers	Rectal Mucosa Donor 29	rectum

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