Variant report

Variant	rs57836721
Chromosome Location	chr1:185523168-185523169
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185285184..185286832-chr1:185521305..185523593,2	MCF-7	breast:
2	chr1:185285876..185287918-chr1:185522618..185524313,2	K562	blood:

Variant related genes	Relation type
ENSG00000116679	Chromatin interaction
ENSG00000273004	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10911754	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911755	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11576129	0.84[EUR][1000 genomes]
rs11576884	0.80[EUR][1000 genomes]
rs11581960	0.80[EUR][1000 genomes]
rs11583193	0.80[EUR][1000 genomes]
rs11586588	0.83[EUR][1000 genomes]
rs11586605	0.87[EUR][1000 genomes]
rs12029108	0.91[EUR][1000 genomes]
rs12048982	0.80[EUR][1000 genomes]
rs12402146	0.80[EUR][1000 genomes]
rs12402607	0.80[EUR][1000 genomes]
rs1321998	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321999	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295792	0.91[EUR][1000 genomes]
rs28776539	0.80[EUR][1000 genomes]
rs35495151	1.00[EUR][1000 genomes]
rs41453048	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56822355	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58678353	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58848006	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701720	0.81[EUR][1000 genomes]
rs72726098	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72727706	0.83[EUR][1000 genomes]
rs72727712	0.91[EUR][1000 genomes]
rs72727717	0.80[EUR][1000 genomes]
rs7518777	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv947556	chr1:185515946-185523530	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185520800-185528800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:185521000-185533800	Weak transcription	Placenta	Placenta
3	chr1:185522400-185523200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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