Variant report

Variant	rs13226155
Chromosome Location	chr7:33579236-33579237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10486538	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12701303	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12701304	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13226813	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13235992	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933018	chr7:33506325-33707270	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830945	chr7:33526648-33670592	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33547000-33579400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr7:33569000-33580400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr7:33569000-33584000	Weak transcription	Right Ventricle	heart
4	chr7:33571000-33582400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr7:33572000-33587200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:33574600-33583000	Weak transcription	Primary T cells from cord blood	blood
7	chr7:33574600-33584000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:33574600-33584400	Weak transcription	Gastric	stomach
9	chr7:33574600-33594200	Weak transcription	Aorta	Aorta
10	chr7:33575000-33585800	Weak transcription	Fetal Stomach	stomach
11	chr7:33576000-33587600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr7:33576200-33584400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:33576200-33584600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:33576800-33579800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr7:33577600-33581000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
16	chr7:33577800-33589200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr7:33578400-33579600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
18	chr7:33578600-33581000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:33578800-33579600	Enhancers	Psoas Muscle	Psoas
20	chr7:33578800-33579600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr7:33578800-33579800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
22	chr7:33578800-33581000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr7:33578800-33581400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr7:33579000-33579600	Enhancers	Colon Smooth Muscle	Colon
25	chr7:33579000-33580800	Weak transcription	Pancreas	Pancrea
26	chr7:33579000-33584000	Weak transcription	Right Atrium	heart
27	chr7:33579000-33599000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr7:33579000-33602800	Weak transcription	Fetal Lung	lung
29	chr7:33579200-33579400	Enhancers	HSMM	muscle
30	chr7:33579200-33579600	Weak transcription	Fetal Intestine Small	intestine
31	chr7:33579200-33579800	Enhancers	HSMMtube	muscle
32	chr7:33579200-33580000	Enhancers	Fetal Heart	heart
33	chr7:33579200-33584000	Weak transcription	Fetal Muscle Leg	muscle
34	chr7:33579200-33584000	Weak transcription	Left Ventricle	heart
35	chr7:33579200-33584200	Weak transcription	Brain Substantia Nigra	brain
36	chr7:33579200-33598800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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