Variant report

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10486538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12701303	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12701304	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13226155	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13235992	1.00[CEU][hapmap]
rs16879168	0.82[CEU][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes]
rs2392246	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933018	chr7:33506325-33707270	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830945	chr7:33526648-33670592	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1794786	chr7:33586237-33599818	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1029365	chr7:33594473-34532111	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33579000-33599000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:33579000-33602800	Weak transcription	Fetal Lung	lung
3	chr7:33579200-33598800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr7:33581000-33601800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:33584400-33601200	Weak transcription	Ovary	ovary
6	chr7:33587800-33617800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:33592800-33665600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:33593400-33594800	Enhancers	Psoas Muscle	Psoas
9	chr7:33593800-33595600	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr7:33594000-33594800	Enhancers	HUVEC	blood vessel
11	chr7:33594200-33595200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:33594400-33594800	Active TSS	Fetal Heart	heart
13	chr7:33594400-33596600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr7:33594400-33599000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr7:33594600-33595000	Active TSS	Fetal Muscle Leg	muscle
16	chr7:33594600-33595000	Enhancers	HSMMtube	muscle
17	chr7:33594600-33597200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:33594600-33598000	Weak transcription	Lung	lung
19	chr7:33594600-33598600	Weak transcription	HSMM	muscle
20	chr7:33594600-33654600	Weak transcription	Aorta	Aorta

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