Variant report

Variant	rs16879168
Chromosome Location	chr7:33569145-33569146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:33568845..33571734-chr7:33576491..33579149,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10486538	0.82[CEU][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap]
rs12701303	0.86[AMR][1000 genomes]
rs12701304	0.82[CEU][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes]
rs13226813	0.82[CEU][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes]
rs13235992	0.82[CEU][hapmap]
rs17170212	1.00[AFR][1000 genomes]
rs17170219	1.00[AFR][1000 genomes]
rs2392246	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv933018	chr7:33506325-33707270	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830945	chr7:33526648-33670592	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33542400-33574200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:33543600-33574200	Weak transcription	Ovary	ovary
3	chr7:33547000-33579400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr7:33557200-33572600	Weak transcription	Aorta	Aorta
5	chr7:33557200-33572800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:33560400-33570800	Weak transcription	Lung	lung
7	chr7:33567400-33573600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:33567600-33574200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:33567600-33578800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:33567800-33569200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:33568000-33572800	Weak transcription	Fetal Intestine Large	intestine
12	chr7:33568800-33573000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:33568800-33574200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:33568800-33574400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:33568800-33574800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:33569000-33572800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:33569000-33574200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:33569000-33574200	Weak transcription	Left Ventricle	heart
19	chr7:33569000-33576800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr7:33569000-33580400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr7:33569000-33584000	Weak transcription	Right Ventricle	heart

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