Variant report

Variant	rs1322650
Chromosome Location	chr6:44520451-44520452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1322653	0.89[ASN][1000 genomes]
rs1998402	0.88[ASN][1000 genomes]
rs2065158	0.92[ASN][1000 genomes]
rs3734716	0.94[ASN][1000 genomes]
rs62437271	0.82[ASN][1000 genomes]
rs6918083	0.85[ASN][1000 genomes]
rs7451995	0.86[ASN][1000 genomes]
rs911981	0.84[ASN][1000 genomes]
rs9349293	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528484	chr6:44520451-44524173	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1322650	TRERF1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44513400-44523800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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