Variant report

Variant	rs6918083
Chromosome Location	chr6:44509453-44509454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1322650	0.85[ASN][1000 genomes]
rs1322653	0.84[ASN][1000 genomes]
rs1998402	0.97[ASN][1000 genomes]
rs1998403	0.85[ASN][1000 genomes]
rs2065158	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3734716	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55739205	0.82[ASN][1000 genomes]
rs62437271	0.82[ASN][1000 genomes]
rs736259	0.86[ASN][1000 genomes]
rs7451995	0.97[ASN][1000 genomes]
rs911981	0.99[ASN][1000 genomes]
rs9349293	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5283	chr6:44505982-44517131	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44492400-44509800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:44503400-44510200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:44506000-44510200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:44508000-44509600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:44509000-44509600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:44509000-44511200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:44509200-44510000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:44509200-44511600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:44509400-44509800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:44509400-44509800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:44509400-44510200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:44509400-44510200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:44509400-44510200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:44509400-44510200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:44509400-44510200	Enhancers	Ovary	ovary
16	chr6:44509400-44510400	Enhancers	Adipose Nuclei	Adipose
17	chr6:44509400-44510600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:44509400-44510600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:44509400-44511000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr6:44509400-44511000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:44509400-44511000	Enhancers	HSMMtube	muscle
22	chr6:44509400-44511400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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