Variant report

Variant rs1998402
Chromosome Location chr6:44510011-44510012
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:44503400-44510200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr6:44506000-44510200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr6:44509000-44511200 Enhancers iPS-18 Cell Line embryonic stem cell
4 chr6:44509200-44511600 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
5 chr6:44509400-44510200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
6 chr6:44509400-44510200 Enhancers HUES48 Cell Line embryonic stem cell
7 chr6:44509400-44510200 Enhancers HUES6 Cell Line embryonic stem cell
8 chr6:44509400-44510200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
9 chr6:44509400-44510200 Enhancers Ovary ovary
10 chr6:44509400-44510400 Enhancers Adipose Nuclei Adipose
11 chr6:44509400-44510600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr6:44509400-44510600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
13 chr6:44509400-44511000 Enhancers H1 Cell Line embryonic stem cell
14 chr6:44509400-44511000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr6:44509400-44511000 Enhancers HSMMtube muscle
16 chr6:44509400-44511400 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
17 chr6:44509600-44510200 Enhancers HUES64 Cell Line embryonic stem cell
18 chr6:44509600-44510200 Enhancers Brain Anterior Caudate brain
19 chr6:44509600-44510200 Active TSS Skeletal Muscle Male skeletal muscle
20 chr6:44509600-44510400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
21 chr6:44509600-44510800 Enhancers Fetal Lung lung
22 chr6:44509600-44511000 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr6:44509600-44511000 Enhancers Skeletal Muscle Female skeletal muscle
24 chr6:44509600-44511200 Enhancers ES-I3 Cell Line embryonic stem cell
25 chr6:44509800-44510400 Active TSS Brain Hippocampus Middle brain
26 chr6:44509800-44510400 Active TSS Osteobl bone
27 chr6:44509800-44510600 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr6:44509800-44510600 Bivalent/Poised TSS Foreskin Fibroblast Primary Cells skin01 Skin
29 chr6:44509800-44510800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr6:44509800-44511000 Enhancers iPS-15b Cell Line embryonic stem cell
31 chr6:44509800-44513000 Weak transcription H9 Cell Line embryonic stem cell
32 chr6:44510000-44510200 Enhancers Brain Germinal Matrix brain
33 chr6:44510000-44510400 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr6:44510000-44510400 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
35 chr6:44510000-44510600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr6:44510000-44510600 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr6:44510000-44510600 Flanking Active TSS Muscle Satellite Cultured Cells --
38 chr6:44510000-44510600 Flanking Bivalent TSS/Enh Cortex derived primary cultured neurospheres brain
39 chr6:44510000-44510600 Flanking Bivalent TSS/Enh Ganglion Eminence derived primary cultured neurospheres brain
40 chr6:44510000-44510600 Flanking Active TSS NH-A brain
41 chr6:44510000-44510600 Active TSS NHLF lung
42 chr6:44510000-44511000 Flanking Active TSS iPS-20b Cell Line embryonic stem cell

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