Variant report
| Variant | rs13227733 |
|---|---|
| Chromosome Location | chr7:15641521-15641522 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10226211 | 0.92[EUR][1000 genomes] |
| rs10226348 | 0.92[EUR][1000 genomes] |
| rs10238735 | 0.82[ASN][1000 genomes] |
| rs10240374 | 0.92[EUR][1000 genomes] |
| rs10256041 | 0.84[EUR][1000 genomes] |
| rs10271775 | 0.84[EUR][1000 genomes] |
| rs10281909 | 0.92[EUR][1000 genomes] |
| rs11525793 | 0.88[ASN][1000 genomes] |
| rs11526192 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11763353 | 0.87[EUR][1000 genomes] |
| rs11764580 | 0.84[EUR][1000 genomes] |
| rs12672203 | 0.86[JPT][hapmap] |
| rs12699743 | 0.97[EUR][1000 genomes] |
| rs12699744 | 0.97[EUR][1000 genomes] |
| rs12699745 | 0.94[EUR][1000 genomes] |
| rs12699746 | 0.97[EUR][1000 genomes] |
| rs13221521 | 0.81[EUR][1000 genomes] |
| rs13232530 | 0.97[EUR][1000 genomes] |
| rs13234532 | 0.90[AMR][1000 genomes] |
| rs17168852 | 0.90[ASN][1000 genomes] |
| rs17168861 | 0.90[ASN][1000 genomes] |
| rs17168881 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17168892 | 0.97[EUR][1000 genomes] |
| rs17168895 | 0.82[EUR][1000 genomes] |
| rs34067265 | 0.97[EUR][1000 genomes] |
| rs36006886 | 0.94[EUR][1000 genomes] |
| rs59778229 | 0.82[ASN][1000 genomes] |
| rs6461191 | 0.84[EUR][1000 genomes] |
| rs6461201 | 0.86[JPT][hapmap] |
| rs67307027 | 0.89[ASN][1000 genomes] |
| rs6949770 | 0.84[EUR][1000 genomes] |
| rs6954772 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6964583 | 0.91[ASN][1000 genomes] |
| rs6967149 | 0.97[EUR][1000 genomes] |
| rs6968582 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs71540711 | 0.84[EUR][1000 genomes] |
| rs7788105 | 0.92[EUR][1000 genomes] |
| rs7791533 | 0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv932168 | chr7:15573437-15895294 | Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv523199 | chr7:15582208-16042596 | Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv887735 | chr7:15625992-15698178 | Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNAmiRNA target site | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:15630200-15648800 | Weak transcription | Fetal Lung | lung |
| 2 | chr7:15640000-15651200 | Weak transcription | Adipose Nuclei | Adipose |
| 3 | chr7:15640000-15662400 | Weak transcription | Fetal Muscle Leg | muscle |
| 4 | chr7:15640000-15663800 | Weak transcription | Fetal Muscle Trunk | muscle |
