Variant report

Variant	rs13228622
Chromosome Location	chr7:41153826-41153827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17715211	1.00[AFR][1000 genomes]
rs17772037	1.00[AFR][1000 genomes]
rs61397149	1.00[AFR][1000 genomes]
rs62449448	1.00[AFR][1000 genomes]
rs62449449	1.00[AFR][1000 genomes]
rs62449450	1.00[AFR][1000 genomes]
rs62452860	1.00[AFR][1000 genomes]
rs62452861	1.00[AFR][1000 genomes]
rs62452865	1.00[AFR][1000 genomes]
rs62452871	1.00[AFR][1000 genomes]
rs62452872	1.00[AFR][1000 genomes]
rs62452873	1.00[AFR][1000 genomes]
rs62452875	1.00[AFR][1000 genomes]
rs62452877	1.00[AFR][1000 genomes]
rs62452879	1.00[AFR][1000 genomes]
rs62452880	1.00[AFR][1000 genomes]
rs62452881	1.00[AFR][1000 genomes]
rs62452882	1.00[AFR][1000 genomes]
rs62452883	1.00[AFR][1000 genomes]
rs62452885	1.00[AFR][1000 genomes]
rs62452886	1.00[AFR][1000 genomes]
rs7778307	1.00[AFR][1000 genomes]
rs7802620	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41129200-41175200	Weak transcription	Aorta	Aorta
2	chr7:41152800-41154200	Enhancers	NHDF-Ad	bronchial
3	chr7:41153000-41154000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:41153200-41154000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:41153200-41154000	Enhancers	Fetal Lung	lung
6	chr7:41153200-41154800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:41153400-41154200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:41153400-41154400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:41153400-41156600	Enhancers	NHEK	skin
10	chr7:41153400-41156800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:41153400-41157200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:41153400-41158400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:41153400-41158400	Enhancers	HMEC	breast
14	chr7:41153600-41154200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr7:41153800-41154600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr7:41153800-41155800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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