Variant report

Variant	rs7778307
Chromosome Location	chr7:41033863-41033864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10486697	1.00[AFR][1000 genomes]
rs10486701	0.83[ASN][1000 genomes]
rs10486702	0.83[ASN][1000 genomes]
rs10486704	0.83[ASN][1000 genomes]
rs11766919	0.91[ASN][1000 genomes]
rs11767383	0.83[ASN][1000 genomes]
rs11770716	0.83[ASN][1000 genomes]
rs11771855	0.83[ASN][1000 genomes]
rs11771896	0.87[ASN][1000 genomes]
rs12111988	0.83[ASN][1000 genomes]
rs12113722	0.83[ASN][1000 genomes]
rs13228622	1.00[AFR][1000 genomes]
rs16880258	0.83[ASN][1000 genomes]
rs17171801	0.91[ASN][1000 genomes]
rs17171803	0.83[ASN][1000 genomes]
rs17171805	0.83[ASN][1000 genomes]
rs17714920	0.82[EUR][1000 genomes]
rs17715211	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17715435	0.83[ASN][1000 genomes]
rs17771935	0.87[ASN][1000 genomes]
rs17772025	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17772037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17772212	0.83[ASN][1000 genomes]
rs1962786	0.83[ASN][1000 genomes]
rs2158812	0.83[ASN][1000 genomes]
rs2214878	0.82[EUR][1000 genomes]
rs4141244	0.83[ASN][1000 genomes]
rs4141245	0.83[ASN][1000 genomes]
rs58574391	0.83[ASN][1000 genomes]
rs58698475	0.81[ASN][1000 genomes]
rs61210370	0.83[ASN][1000 genomes]
rs61303073	0.86[EUR][1000 genomes]
rs61397149	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62449446	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62449447	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62449448	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62449449	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62449450	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62449453	0.82[EUR][1000 genomes]
rs62452860	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62452861	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62452862	0.82[EUR][1000 genomes]
rs62452865	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62452871	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62452872	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62452873	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62452875	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62452877	1.00[AFR][1000 genomes]
rs62452879	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62452880	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62452881	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62452882	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62452883	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62452885	1.00[AFR][1000 genomes]
rs62452886	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62452912	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62452914	0.91[ASN][1000 genomes]
rs6947406	0.83[ASN][1000 genomes]
rs6970558	1.00[AFR][1000 genomes]
rs6970735	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6978876	0.82[EUR][1000 genomes]
rs736763	0.83[ASN][1000 genomes]
rs73688222	0.83[ASN][1000 genomes]
rs73688224	0.83[ASN][1000 genomes]
rs7793162	1.00[AFR][1000 genomes]
rs7802620	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7803955	0.83[ASN][1000 genomes]
rs7810451	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5714	chr7:41026022-41059813	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41011800-41042000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:41019200-41036200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:41020800-41034200	Weak transcription	Aorta	Aorta
4	chr7:41031600-41036000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:41032000-41035600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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