Variant report

Variant	rs11766919
Chromosome Location	chr7:41042553-41042554
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41023501..41025536-chr7:41042480..41044856,2	MCF-7	breast:
2	chr7:41042367..41043212-chr7:41751122..41752034,4	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10486701	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10486702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10486704	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11760806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11767383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11770716	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11771855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11771896	0.95[ASN][1000 genomes]
rs12111988	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12113722	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16880258	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17171801	1.00[ASN][1000 genomes]
rs17171803	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17171805	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17715211	0.87[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs17715435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17771935	0.95[ASN][1000 genomes]
rs17772025	0.96[ASN][1000 genomes]
rs17772037	0.89[ASN][1000 genomes]
rs17772091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17772212	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1962786	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2158812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4141244	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4141245	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58574391	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58698475	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61210370	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62449704	1.00[AMR][1000 genomes]
rs62452912	0.95[ASN][1000 genomes]
rs62452914	1.00[ASN][1000 genomes]
rs6947406	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6970735	0.86[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs736763	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73688222	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73688224	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7778307	0.91[ASN][1000 genomes]
rs7803955	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7810451	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5714	chr7:41026022-41059813	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41036400-41045000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:41037000-41050400	Weak transcription	Aorta	Aorta
3	chr7:41040000-41043600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:41041400-41043000	Enhancers	Hela-S3	cervix
5	chr7:41041600-41048200	Enhancers	Placenta	Placenta
6	chr7:41042000-41046200	Enhancers	Placenta Amnion	Placenta Amnion
7	chr7:41042000-41047200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:41042000-41048000	Enhancers	HMEC	breast
9	chr7:41042200-41043600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:41042200-41048000	Enhancers	NHEK	skin
11	chr7:41042200-41050600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:41042400-41048400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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