Variant report

Variant	rs17715211
Chromosome Location	chr7:41021911-41021912
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10486697	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11766919	0.86[ASN][1000 genomes]
rs11771896	0.91[ASN][1000 genomes]
rs13228622	1.00[AFR][1000 genomes]
rs17171801	0.86[ASN][1000 genomes]
rs17714920	0.86[EUR][1000 genomes]
rs17771935	0.91[ASN][1000 genomes]
rs17772025	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17772037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2214878	0.86[EUR][1000 genomes]
rs61303073	0.90[EUR][1000 genomes]
rs61397149	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62449446	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62449447	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62449448	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62449449	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62449450	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62449453	0.86[EUR][1000 genomes]
rs62452860	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62452861	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62452862	0.86[EUR][1000 genomes]
rs62452864	0.84[EUR][1000 genomes]
rs62452865	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62452871	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62452872	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62452873	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62452875	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62452877	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62452879	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62452880	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62452881	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62452882	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62452883	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62452885	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs62452886	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62452912	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62452914	0.86[ASN][1000 genomes]
rs6970558	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6970735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6978876	0.86[EUR][1000 genomes]
rs7778307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7793162	1.00[AFR][1000 genomes]
rs7802620	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41011800-41042000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:41017400-41024400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:41019200-41036200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:41020800-41034200	Weak transcription	Aorta	Aorta
5	chr7:41021200-41022000	Enhancers	Hela-S3	cervix

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