Variant report
Variant | rs17771935 |
---|---|
Chromosome Location | chr7:41016411-41016412 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10486701 | 0.84[ASN][1000 genomes] |
rs10486702 | 0.84[ASN][1000 genomes] |
rs10486704 | 0.84[ASN][1000 genomes] |
rs11766919 | 0.95[ASN][1000 genomes] |
rs11767383 | 0.84[ASN][1000 genomes] |
rs11770716 | 0.84[ASN][1000 genomes] |
rs11771855 | 0.84[ASN][1000 genomes] |
rs11771896 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12111988 | 0.84[ASN][1000 genomes] |
rs12113722 | 0.84[ASN][1000 genomes] |
rs16880258 | 0.84[ASN][1000 genomes] |
rs17171801 | 0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs17171803 | 0.84[ASN][1000 genomes] |
rs17171805 | 0.84[ASN][1000 genomes] |
rs17714920 | 0.80[AMR][1000 genomes] |
rs17715211 | 0.93[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes] |
rs17715435 | 0.84[ASN][1000 genomes] |
rs17772025 | 0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs17772037 | 0.89[ASN][1000 genomes] |
rs17772212 | 0.84[ASN][1000 genomes] |
rs1962786 | 0.84[ASN][1000 genomes] |
rs2158812 | 0.84[ASN][1000 genomes] |
rs4141244 | 0.84[ASN][1000 genomes] |
rs4141245 | 0.84[ASN][1000 genomes] |
rs58574391 | 0.84[ASN][1000 genomes] |
rs58698475 | 0.82[ASN][1000 genomes] |
rs61210370 | 0.84[ASN][1000 genomes] |
rs61397149 | 0.80[AMR][1000 genomes] |
rs62449446 | 0.80[AMR][1000 genomes] |
rs62449447 | 0.80[AMR][1000 genomes] |
rs62449448 | 0.80[AMR][1000 genomes] |
rs62449449 | 0.80[AMR][1000 genomes] |
rs62449450 | 0.80[AMR][1000 genomes] |
rs62449453 | 0.80[AMR][1000 genomes] |
rs62452860 | 0.80[AMR][1000 genomes] |
rs62452861 | 0.80[AMR][1000 genomes] |
rs62452865 | 0.80[AMR][1000 genomes] |
rs62452871 | 0.80[AMR][1000 genomes] |
rs62452872 | 0.80[AMR][1000 genomes] |
rs62452873 | 0.80[AMR][1000 genomes] |
rs62452875 | 0.80[AMR][1000 genomes] |
rs62452877 | 0.80[AMR][1000 genomes] |
rs62452879 | 0.80[AMR][1000 genomes] |
rs62452880 | 0.80[AMR][1000 genomes] |
rs62452881 | 0.80[AMR][1000 genomes] |
rs62452882 | 0.80[AMR][1000 genomes] |
rs62452883 | 0.80[AMR][1000 genomes] |
rs62452885 | 0.80[AMR][1000 genomes] |
rs62452886 | 0.80[AMR][1000 genomes] |
rs62452912 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62452914 | 0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6947406 | 0.84[ASN][1000 genomes] |
rs6970735 | 0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.91[ASN][1000 genomes] |
rs6978876 | 0.80[AMR][1000 genomes] |
rs736763 | 0.84[ASN][1000 genomes] |
rs73688222 | 0.84[ASN][1000 genomes] |
rs73688224 | 0.84[ASN][1000 genomes] |
rs7778307 | 0.87[ASN][1000 genomes] |
rs7802620 | 0.80[AMR][1000 genomes] |
rs7803955 | 0.84[ASN][1000 genomes] |
rs7810451 | 0.83[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1030648 | chr7:40218618-41032599 | Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:40986200-41020600 | Weak transcription | Aorta | Aorta |
2 | chr7:41011800-41042000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
3 | chr7:41012200-41020200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
4 | chr7:41012800-41017400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
5 | chr7:41016200-41017400 | Enhancers | Pancreatic Islets | Pancreatic Islet |
6 | chr7:41016400-41018600 | Enhancers | Hela-S3 | cervix |