Variant report

Variant	rs73688222
Chromosome Location	chr7:41048141-41048142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10486701	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486702	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486704	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11766919	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11767383	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770716	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771855	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771896	0.84[ASN][1000 genomes]
rs12111988	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12113722	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16880258	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17171801	0.88[ASN][1000 genomes]
rs17171803	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17171805	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17715435	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17771935	0.84[ASN][1000 genomes]
rs17772025	0.85[ASN][1000 genomes]
rs17772037	0.81[ASN][1000 genomes]
rs17772091	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17772212	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1962786	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2158812	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4141244	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4141245	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55752663	0.97[AFR][1000 genomes]
rs58574391	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58698475	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61210370	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452912	0.84[ASN][1000 genomes]
rs62452914	0.88[ASN][1000 genomes]
rs6947406	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs736763	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73688223	0.97[AFR][1000 genomes]
rs73688224	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778307	0.83[ASN][1000 genomes]
rs7803955	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7810451	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5714	chr7:41026022-41059813	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41037000-41050400	Weak transcription	Aorta	Aorta
2	chr7:41041600-41048200	Enhancers	Placenta	Placenta
3	chr7:41042200-41050600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:41042400-41048400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:41045400-41049200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:41045800-41048200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:41046400-41050000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:41046400-41050000	Weak transcription	Adipose Nuclei	Adipose
9	chr7:41047000-41048200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:41047000-41048200	Enhancers	Fetal Brain Female	brain
11	chr7:41047200-41049200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr7:41047200-41049800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:41047200-41049800	Weak transcription	NHDF-Ad	bronchial
14	chr7:41047200-41050000	Weak transcription	NHLF	lung
15	chr7:41047200-41050200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:41047200-41050200	Weak transcription	HUVEC	blood vessel
17	chr7:41047400-41050000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:41047400-41050200	Weak transcription	HSMMtube	muscle
19	chr7:41047800-41049000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr7:41047800-41049600	Weak transcription	Fetal Muscle Leg	muscle
21	chr7:41047800-41049800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr7:41047800-41050000	Weak transcription	HSMM	muscle
23	chr7:41047800-41050400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr7:41047800-41052800	Weak transcription	NH-A	brain
25	chr7:41048000-41048200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr7:41048000-41048200	Weak transcription	Left Ventricle	heart
27	chr7:41048000-41048400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:41048000-41049800	Weak transcription	Hela-S3	cervix
29	chr7:41048000-41050400	Weak transcription	Osteobl	bone
30	chr7:41048000-41051400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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