Variant report

Variant	rs6947406
Chromosome Location	chr7:41046625-41046626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41042842..41044547-chr7:41046051..41047750,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10486701	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486702	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486704	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11766919	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11767383	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771855	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771896	0.84[ASN][1000 genomes]
rs12111988	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12113722	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16880258	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17171801	0.88[ASN][1000 genomes]
rs17171803	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17171805	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17715211	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs17715435	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17771935	0.84[ASN][1000 genomes]
rs17772025	0.85[ASN][1000 genomes]
rs17772037	0.81[ASN][1000 genomes]
rs17772091	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17772212	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1962786	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2158812	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4141244	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4141245	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55752663	0.95[AFR][1000 genomes]
rs58574391	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58698475	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61210370	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452912	0.84[ASN][1000 genomes]
rs62452914	0.88[ASN][1000 genomes]
rs6970735	0.90[JPT][hapmap]
rs736763	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73688222	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688223	0.95[AFR][1000 genomes]
rs73688224	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778307	0.83[ASN][1000 genomes]
rs7803955	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7810451	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5714	chr7:41026022-41059813	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41037000-41050400	Weak transcription	Aorta	Aorta
2	chr7:41041600-41048200	Enhancers	Placenta	Placenta
3	chr7:41042000-41047200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:41042000-41048000	Enhancers	HMEC	breast
5	chr7:41042200-41048000	Enhancers	NHEK	skin
6	chr7:41042200-41050600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:41042400-41048400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:41043600-41046800	Enhancers	Hela-S3	cervix
9	chr7:41043800-41047000	Weak transcription	Fetal Brain Female	brain
10	chr7:41044200-41048000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:41044400-41047200	Enhancers	NHDF-Ad	bronchial
12	chr7:41044400-41047800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:41044400-41047800	Enhancers	HSMM	muscle
14	chr7:41044600-41047200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:41044600-41047200	Enhancers	NHLF	lung
16	chr7:41044600-41047400	Enhancers	HSMMtube	muscle
17	chr7:41044600-41047800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr7:41044600-41047800	Enhancers	NH-A	brain
19	chr7:41044600-41048000	Enhancers	Osteobl	bone
20	chr7:41044800-41047200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:41045000-41047200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr7:41045000-41047400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:41045000-41047600	Enhancers	Fetal Stomach	stomach
24	chr7:41045000-41047800	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr7:41045400-41049200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr7:41045600-41047000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr7:41045600-41048000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:41045800-41047000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:41045800-41048000	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr7:41045800-41048200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:41046000-41047000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr7:41046000-41047200	Enhancers	Liver	Liver
33	chr7:41046200-41047000	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr7:41046400-41047000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:41046400-41050000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr7:41046400-41050000	Weak transcription	Adipose Nuclei	Adipose
37	chr7:41046600-41048000	Enhancers	Fetal Lung	lung

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