Variant report

Variant	rs17772091
Chromosome Location	chr7:41050428-41050429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10486701	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10486702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10486704	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11760806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11766919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11767383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11770716	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11771855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12111988	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12113722	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16880258	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17171801	0.81[ASN][1000 genomes]
rs17171803	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17171805	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17715435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17772212	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1962786	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2158812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4141244	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4141245	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58574391	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58698475	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61210370	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62449704	1.00[AMR][1000 genomes]
rs62452914	0.81[ASN][1000 genomes]
rs6947406	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs736763	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73688222	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73688224	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7803955	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7810451	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5714	chr7:41026022-41059813	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41042200-41050600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:41047800-41052800	Weak transcription	NH-A	brain
3	chr7:41048000-41051400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:41048600-41065600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:41049000-41051600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr7:41049200-41052000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:41049600-41051600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:41049600-41052000	Enhancers	Fetal Muscle Leg	muscle
9	chr7:41049800-41050800	Enhancers	Hela-S3	cervix
10	chr7:41049800-41051600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:41049800-41051800	Enhancers	NHDF-Ad	bronchial
12	chr7:41049800-41053200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr7:41050000-41050800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:41050000-41051000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:41050000-41051000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:41050000-41051000	Enhancers	Adipose Nuclei	Adipose
17	chr7:41050000-41051000	Enhancers	NHLF	lung
18	chr7:41050000-41051200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr7:41050000-41052000	Enhancers	HSMM	muscle
20	chr7:41050200-41051000	Enhancers	HSMMtube	muscle
21	chr7:41050200-41051200	Enhancers	HUVEC	blood vessel
22	chr7:41050200-41051200	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr7:41050400-41051000	Enhancers	Osteobl	bone

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