Variant report

Variant	rs16880258
Chromosome Location	chr7:41060801-41060802
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10266818	0.80[ASN][1000 genomes]
rs10275188	0.80[ASN][1000 genomes]
rs10486701	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10486702	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10486704	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766919	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11767383	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11770716	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11771855	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11771896	0.84[ASN][1000 genomes]
rs12111988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12113722	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171801	0.88[ASN][1000 genomes]
rs17171803	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171805	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17715211	0.90[JPT][hapmap]
rs17715435	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17771935	0.84[ASN][1000 genomes]
rs17772025	0.85[ASN][1000 genomes]
rs17772037	0.81[ASN][1000 genomes]
rs17772091	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17772212	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158812	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4141244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4141245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58574391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58698475	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61210370	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62452912	0.84[ASN][1000 genomes]
rs62452914	0.88[ASN][1000 genomes]
rs6947406	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6970735	0.90[JPT][hapmap]
rs736763	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688222	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73688224	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73688226	0.86[AFR][1000 genomes]
rs7778307	0.83[ASN][1000 genomes]
rs7803955	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810451	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41048600-41065600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:41059800-41061200	Enhancers	NHDF-Ad	bronchial
3	chr7:41060800-41065800	Weak transcription	HSMMtube	muscle
4	chr7:41060800-41066600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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