Variant report

Variant	rs10486704
Chromosome Location	chr7:41055230-41055231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41050652..41052557-chr7:41053735..41055459,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10266818	0.80[ASN][1000 genomes]
rs10275188	0.80[ASN][1000 genomes]
rs10486701	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10486702	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11766919	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11767383	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11770716	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11771855	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11771896	0.84[ASN][1000 genomes]
rs12111988	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12113722	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16880258	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171801	0.88[ASN][1000 genomes]
rs17171803	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171805	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17715211	0.90[JPT][hapmap]
rs17715435	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17771935	0.84[ASN][1000 genomes]
rs17772025	0.85[ASN][1000 genomes]
rs17772037	0.81[ASN][1000 genomes]
rs17772091	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17772212	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962786	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158812	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4141244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4141245	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58574391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58698475	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61210370	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62452912	0.84[ASN][1000 genomes]
rs62452914	0.88[ASN][1000 genomes]
rs6947406	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6970735	0.90[JPT][hapmap]
rs736763	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688222	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73688224	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7778307	0.83[ASN][1000 genomes]
rs7803955	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810451	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5714	chr7:41026022-41059813	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41048600-41065600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:41051000-41060400	Weak transcription	HSMMtube	muscle

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