Variant report

Variant	rs55752663
Chromosome Location	chr7:41047597-41047598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41042842..41044547-chr7:41046051..41047750,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11770716	0.95[AFR][1000 genomes]
rs6947406	0.95[AFR][1000 genomes]
rs73688222	0.97[AFR][1000 genomes]
rs73688223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5714	chr7:41026022-41059813	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41037000-41050400	Weak transcription	Aorta	Aorta
2	chr7:41041600-41048200	Enhancers	Placenta	Placenta
3	chr7:41042000-41048000	Enhancers	HMEC	breast
4	chr7:41042200-41048000	Enhancers	NHEK	skin
5	chr7:41042200-41050600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:41042400-41048400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:41044200-41048000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:41044400-41047800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:41044400-41047800	Enhancers	HSMM	muscle
10	chr7:41044600-41047800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr7:41044600-41047800	Enhancers	NH-A	brain
12	chr7:41044600-41048000	Enhancers	Osteobl	bone
13	chr7:41045000-41047600	Enhancers	Fetal Stomach	stomach
14	chr7:41045000-41047800	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr7:41045400-41049200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr7:41045600-41048000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:41045800-41048000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr7:41045800-41048200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:41046400-41050000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:41046400-41050000	Weak transcription	Adipose Nuclei	Adipose
21	chr7:41046600-41048000	Enhancers	Fetal Lung	lung
22	chr7:41046800-41047800	Enhancers	Fetal Muscle Leg	muscle
23	chr7:41047000-41047800	Enhancers	Right Ventricle	heart
24	chr7:41047000-41048200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:41047000-41048200	Enhancers	Fetal Brain Female	brain
26	chr7:41047200-41048000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:41047200-41048000	Enhancers	Hela-S3	cervix
28	chr7:41047200-41049200	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr7:41047200-41049800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:41047200-41049800	Weak transcription	NHDF-Ad	bronchial
31	chr7:41047200-41050000	Weak transcription	NHLF	lung
32	chr7:41047200-41050200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr7:41047200-41050200	Weak transcription	HUVEC	blood vessel
34	chr7:41047400-41047800	Weak transcription	Left Ventricle	heart
35	chr7:41047400-41050000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr7:41047400-41050200	Weak transcription	HSMMtube	muscle

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