Variant report

Variant	rs6978876
Chromosome Location	chr7:40962765-40962766
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10486697	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11771896	0.80[AMR][1000 genomes]
rs17714920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17715211	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs17771935	0.80[AMR][1000 genomes]
rs17772037	0.82[EUR][1000 genomes]
rs2214878	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61303073	0.95[EUR][1000 genomes]
rs61397149	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62449446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62449447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62449448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62449449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62449450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62449453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62452860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62452861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62452862	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62452864	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62452865	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62452871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62452872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62452873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62452875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62452877	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62452879	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62452880	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62452881	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62452882	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62452883	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62452885	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62452886	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6970558	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6970735	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs7778307	0.82[EUR][1000 genomes]
rs7793162	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7802620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40953200-40963200	Enhancers	Hela-S3	cervix
2	chr7:40953600-40963800	Weak transcription	Aorta	Aorta
3	chr7:40958200-40963800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:40960400-40962800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr7:40960400-40963600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:40960600-40963600	Enhancers	HMEC	breast
7	chr7:40961000-40962800	Enhancers	Placenta	Placenta
8	chr7:40961000-40962800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr7:40961000-40963400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:40961200-40962800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:40961200-40962800	Enhancers	HSMMtube	muscle
12	chr7:40961600-40962800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:40961600-40962800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:40961600-40963000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:40961600-40963400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:40961600-40963400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr7:40961600-40963400	Enhancers	Osteobl	bone
18	chr7:40961800-40962800	Enhancers	NH-A	brain
19	chr7:40962400-40964400	Enhancers	NHEK	skin
20	chr7:40962600-40963800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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