Variant report

Variant	rs62452864
Chromosome Location	chr7:40969757-40969758
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10486697	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17714920	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17715211	0.84[EUR][1000 genomes]
rs2214878	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61303073	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61397149	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62449446	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62449447	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62449448	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62449449	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62449450	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62449453	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62452860	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62452861	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62452862	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62452865	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452871	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452872	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452873	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452875	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452877	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452879	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452880	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452881	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452882	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452883	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452885	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62452886	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6970558	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6970735	0.84[EUR][1000 genomes]
rs6978876	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7793162	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7802620	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40964000-40974200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links