Variant report

Variant	rs13229300
Chromosome Location	chr7:71386614-71386615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10242189	0.81[JPT][hapmap]
rs10950285	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11763757	0.83[TSI][hapmap]
rs11767496	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12164040	0.84[CEU][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12530530	0.82[JPT][hapmap]
rs12668764	0.86[JPT][hapmap]
rs12670326	0.82[JPT][hapmap]
rs12699110	0.86[JPT][hapmap]
rs13224623	0.86[JPT][hapmap]
rs13227550	0.82[JPT][hapmap]
rs13235673	0.91[JPT][hapmap]
rs13241833	0.82[JPT][hapmap]
rs13243279	0.82[JPT][hapmap]
rs17137575	0.82[JPT][hapmap]
rs17144079	0.86[JPT][hapmap]
rs17144086	0.83[CEU][hapmap]
rs17144104	0.82[JPT][hapmap]
rs17144122	0.82[JPT][hapmap]
rs2051885	0.84[CEU][hapmap]
rs2107880	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2214747	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2867522	0.84[CEU][hapmap]
rs2867560	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs33946733	0.84[TSI][hapmap]
rs4717619	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4719181	0.86[JPT][hapmap]
rs4719182	0.81[JPT][hapmap]
rs4719183	0.86[JPT][hapmap]
rs4719185	0.82[JPT][hapmap]
rs4719186	0.82[JPT][hapmap]
rs4719188	0.82[JPT][hapmap]
rs60530198	0.85[EUR][1000 genomes]
rs6460694	0.84[CEU][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.84[TSI][hapmap]
rs6460695	0.82[JPT][hapmap]
rs6958157	0.87[CEU][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];0.91[TSI][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6959613	1.00[CEU][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6964517	0.84[CEU][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6966229	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6976024	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs721235	0.82[JPT][hapmap]
rs7785844	0.81[JPT][hapmap]
rs7795294	0.84[CEU][hapmap]
rs7795444	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs9638637	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1027496	chr7:71162362-71575116	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv1017367	chr7:71339782-71476575	ZNF genes & repeats Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71380400-71387600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:71381600-71395200	Weak transcription	Thymus	Thymus
3	chr7:71382200-71390800	Weak transcription	Fetal Thymus	thymus
4	chr7:71386600-71387200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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