Variant report

Variant	rs33946733
Chromosome Location	chr7:71326222-71326223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10242189	0.91[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs10950284	0.80[ASN][1000 genomes]
rs11763757	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11770636	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12164040	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs12699099	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs12699100	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs13229300	0.84[TSI][hapmap]
rs17144084	0.90[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs17144086	0.81[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs2051885	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs2214747	0.82[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2867519	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2867522	0.86[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs6460693	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6460694	0.81[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.81[TSI][hapmap];0.80[ASN][1000 genomes]
rs6460695	0.81[CHB][hapmap]
rs6958157	0.80[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap]
rs6959613	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs6964517	0.81[CHD][hapmap];0.82[JPT][hapmap]
rs6976024	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs757746	0.88[EUR][1000 genomes]
rs7785844	0.86[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap]
rs7795294	0.81[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs7795444	0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs7811694	0.80[ASN][1000 genomes]
rs9638637	0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1027496	chr7:71162362-71575116	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71309200-71326600	Weak transcription	Fetal Thymus	thymus
2	chr7:71309200-71333200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:71309200-71335800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:71313400-71330000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:71320800-71336400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:71324600-71329200	Weak transcription	Thymus	Thymus
7	chr7:71324800-71330000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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