Variant report

Variant	rs7785844
Chromosome Location	chr7:71341808-71341809
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10242189	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10950284	0.89[ASN][1000 genomes]
rs11763757	0.80[YRI][hapmap]
rs11767496	0.80[ASN][1000 genomes]
rs11770636	0.88[ASN][1000 genomes]
rs12154985	0.89[ASN][1000 genomes]
rs12164040	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs13229300	0.81[JPT][hapmap]
rs17144084	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.94[ASN][1000 genomes]
rs17144086	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.89[ASN][1000 genomes]
rs2051885	0.82[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2107880	0.81[ASN][1000 genomes]
rs2214747	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs2867522	0.82[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs33946733	0.86[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs60530198	0.88[ASN][1000 genomes]
rs6460693	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6460694	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6460695	0.84[GIH][hapmap];0.91[JPT][hapmap]
rs6958157	0.83[CHD][hapmap];0.95[JPT][hapmap]
rs6959613	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs6964517	0.83[CHD][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs6966229	0.81[ASN][1000 genomes]
rs6976024	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7795294	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.89[ASN][1000 genomes]
rs7795444	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs7811694	0.89[ASN][1000 genomes]
rs7812085	0.83[ASN][1000 genomes]
rs9638637	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1027496	chr7:71162362-71575116	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv1017367	chr7:71339782-71476575	ZNF genes & repeats Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7785844	BCL7B	cis	cerebellum	SCAN
rs7785844	CLIP2	cis	parietal	SCAN
rs7785844	CLDN3	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71340200-71343200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:71340400-71342000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:71340800-71342000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:71341200-71342000	ZNF genes & repeats	Thymus	Thymus
5	chr7:71341800-71343800	Weak transcription	Fetal Thymus	thymus
6	chr7:71341800-71350600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links