Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29567775..29570590-chr22:29581265..29582805,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs132308	0.82[CEU][hapmap]
rs132314	0.82[CEU][hapmap]
rs132318	0.82[ASN][1000 genomes]
rs132320	0.82[ASN][1000 genomes]
rs132335	0.96[ASN][1000 genomes]
rs132337	0.92[ASN][1000 genomes]
rs132339	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs132346	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs132347	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs132348	0.82[CEU][hapmap]
rs132350	0.82[CEU][hapmap]
rs132355	0.90[ASN][1000 genomes]
rs132361	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs132362	0.90[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs132364	0.90[ASN][1000 genomes]
rs132366	0.82[CEU][hapmap]
rs132367	0.82[CEU][hapmap]
rs132368	0.90[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs132369	0.90[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs132370	0.82[CEU][hapmap]
rs132373	0.82[CEU][hapmap]
rs132377	0.82[CEU][hapmap]
rs132380	0.82[CEU][hapmap]
rs132382	0.82[CEU][hapmap]
rs132386	0.82[CEU][hapmap]
rs1573711	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs713924	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv524483	chr22:29525126-29630337	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv817986	chr22:29540297-29568963	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29567800-29568600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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