Variant report

Variant	rs13236908
Chromosome Location	chr7:27605672-27605673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1000317	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10951174	0.95[CEU][hapmap]
rs11520772	0.84[CEU][hapmap]
rs12534656	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12539472	0.84[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13224916	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13227521	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13227574	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs13231645	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs13232561	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs13241127	0.93[EUR][1000 genomes]
rs34578407	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34638402	0.82[EUR][1000 genomes]
rs35105727	0.80[EUR][1000 genomes]
rs35733141	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35771883	0.85[EUR][1000 genomes]
rs35816118	0.97[EUR][1000 genomes]
rs35925990	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36069602	0.83[EUR][1000 genomes]
rs4719896	0.91[EUR][1000 genomes]
rs4719901	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4722725	0.89[CEU][hapmap]
rs6944455	0.82[EUR][1000 genomes]
rs6968631	0.80[EUR][1000 genomes]
rs6969043	0.80[EUR][1000 genomes]
rs6969207	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs71539523	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71539525	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71539526	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71539527	0.99[EUR][1000 genomes]
rs71539529	0.97[EUR][1000 genomes]
rs71555704	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13236908	HIBADH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27559400-27627800	Weak transcription	Psoas Muscle	Psoas
2	chr7:27580600-27615000	Weak transcription	Aorta	Aorta
3	chr7:27581400-27617400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:27582400-27650800	Weak transcription	Left Ventricle	heart
5	chr7:27582800-27615000	Weak transcription	Placenta	Placenta
6	chr7:27582800-27615200	Weak transcription	Ovary	ovary
7	chr7:27600600-27645600	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:27601200-27609600	Weak transcription	Osteobl	bone
9	chr7:27603000-27626400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:27603200-27615400	Weak transcription	Adipose Nuclei	Adipose
11	chr7:27603200-27631800	Weak transcription	Primary T cells from cord blood	blood
12	chr7:27603400-27606600	Weak transcription	HSMM	muscle
13	chr7:27603400-27608600	Weak transcription	NHDF-Ad	bronchial
14	chr7:27603400-27609000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:27603600-27626400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr7:27604800-27605800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:27605000-27606600	Weak transcription	Fetal Lung	lung
18	chr7:27605000-27614800	Weak transcription	Fetal Kidney	kidney
19	chr7:27605200-27615400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:27605200-27617200	Weak transcription	Fetal Intestine Small	intestine
21	chr7:27605200-27624400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:27605600-27615200	Weak transcription	Liver	Liver

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