Variant report

Variant	rs35105727
Chromosome Location	chr7:27704015-27704016
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr7:27702171-27704049	K562	blood:	n/a	n/a
2	JUN	chr7:27701498-27704050	K562	blood:	n/a	chr7:27702790-27702799 chr7:27702635-27702644
3	ELF1	chr7:27703854-27704119	K562	blood:	n/a	n/a
4	POLR2A	chr7:27701556-27704059	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:27702844..27705316-chr7:27782990..27784557,2	K562	blood:
2	chr7:27702189..27703735-chr7:27703951..27706256,2	MCF-7	breast:
3	chr7:27699948..27706867-chr7:27775418..27784557,21	K562	blood:
4	chr7:27700432..27708426-chr7:27777901..27782637,20	K562	blood:
5	chr7:27702921..27706495-chr7:27708435..27711221,3	K562	blood:
6	chr7:27702869..27704371-chr7:27770712..27773615,2	K562	blood:

Variant related genes	Relation type
HIBADH	TF binding region
ENSG00000106049	Chromatin interaction
ENSG00000106052	Chromatin interaction
ENSG00000229893	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1000317	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11520772	0.82[EUR][1000 genomes]
rs12155171	0.97[EUR][1000 genomes]
rs12532737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13227574	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13231645	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13236065	0.98[EUR][1000 genomes]
rs13236908	0.80[EUR][1000 genomes]
rs13241127	0.91[AMR][1000 genomes]
rs13247831	0.84[EUR][1000 genomes]
rs1544413	0.81[EUR][1000 genomes]
rs1544414	0.81[EUR][1000 genomes]
rs17613082	0.82[EUR][1000 genomes]
rs17613350	0.82[EUR][1000 genomes]
rs34578407	0.83[EUR][1000 genomes]
rs34594641	0.82[EUR][1000 genomes]
rs34638402	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35232956	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35536764	0.97[EUR][1000 genomes]
rs35733141	0.97[EUR][1000 genomes]
rs35771883	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35816118	0.83[AMR][1000 genomes]
rs36057260	0.82[EUR][1000 genomes]
rs36069602	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36114463	0.91[EUR][1000 genomes]
rs4391326	0.87[EUR][1000 genomes]
rs4719896	0.81[AMR][1000 genomes]
rs4719901	0.86[AMR][1000 genomes]
rs4722725	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6944455	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6968631	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6969043	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6969207	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71539525	0.86[AMR][1000 genomes]
rs71539526	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71539527	0.92[AMR][1000 genomes]
rs71539529	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71539544	0.84[EUR][1000 genomes]
rs71555704	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35105727	HIBADH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27703200-27704800	Enhancers	Stomach Mucosa	stomach
2	chr7:27703200-27708200	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:27703400-27704200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr7:27703400-27704200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr7:27703400-27704200	Weak transcription	HUVEC	blood vessel
6	chr7:27703400-27704200	Flanking Active TSS	K562	blood
7	chr7:27703400-27705400	Enhancers	Placenta	Placenta
8	chr7:27703400-27706200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:27703600-27704200	Enhancers	Duodenum Mucosa	Duodenum
10	chr7:27703600-27704800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:27703600-27708000	Weak transcription	Right Atrium	heart
12	chr7:27703800-27704200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr7:27704000-27705000	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links