Variant report

Variant	rs35733141
Chromosome Location	chr7:27660751-27660752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1000317	0.83[EUR][1000 genomes]
rs12155171	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12532737	0.96[EUR][1000 genomes]
rs12534656	0.80[AMR][1000 genomes]
rs13224916	0.80[AMR][1000 genomes]
rs13227521	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13227574	0.96[EUR][1000 genomes]
rs13231645	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13236065	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13236908	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13247831	0.81[EUR][1000 genomes]
rs34578407	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34638402	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35105727	0.97[EUR][1000 genomes]
rs35232956	0.95[EUR][1000 genomes]
rs35536764	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35771883	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35816118	0.81[EUR][1000 genomes]
rs35925990	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36069602	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36114463	0.87[EUR][1000 genomes]
rs4391326	0.84[EUR][1000 genomes]
rs4719901	0.82[EUR][1000 genomes]
rs4722725	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6944455	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6968631	0.97[EUR][1000 genomes]
rs6969043	0.97[EUR][1000 genomes]
rs6969207	0.97[EUR][1000 genomes]
rs71539523	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71539525	0.82[EUR][1000 genomes]
rs71539526	0.83[EUR][1000 genomes]
rs71539527	0.82[EUR][1000 genomes]
rs71539529	0.86[EUR][1000 genomes]
rs71539544	0.81[EUR][1000 genomes]
rs71555704	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv1802647	chr7:27658495-27673924	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35733141	HIBADH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27651800-27674200	Weak transcription	Hela-S3	cervix
2	chr7:27654400-27696400	Weak transcription	Gastric	stomach
3	chr7:27655400-27665200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:27657200-27662200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:27657400-27661800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:27657400-27661800	ZNF genes & repeats	Fetal Intestine Large	intestine
7	chr7:27657400-27662600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
8	chr7:27658000-27661400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
9	chr7:27658200-27661200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:27658200-27661400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
11	chr7:27658400-27661000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:27658400-27661000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:27658400-27661200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr7:27658400-27661200	ZNF genes & repeats	Fetal Lung	lung
15	chr7:27658400-27661400	ZNF genes & repeats	Liver	Liver
16	chr7:27658400-27662000	ZNF genes & repeats	Dnd41	blood
17	chr7:27658600-27661000	ZNF genes & repeats	Brain Substantia Nigra	brain
18	chr7:27658600-27661000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
19	chr7:27658600-27661200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:27658600-27661200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
21	chr7:27658800-27687800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:27658800-27688600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:27659200-27660800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:27659200-27660800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
25	chr7:27659200-27661200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
26	chr7:27659400-27661000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr7:27659400-27661000	ZNF genes & repeats	A549	lung
28	chr7:27659600-27660800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
29	chr7:27659600-27661000	ZNF genes & repeats	HSMM	muscle
30	chr7:27659600-27661400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
31	chr7:27659800-27661000	ZNF genes & repeats	HepG2	liver
32	chr7:27659800-27661600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:27659800-27672800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr7:27659800-27675400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr7:27659800-27679000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr7:27660000-27661000	Strong transcription	Placenta	Placenta
37	chr7:27660000-27661200	Weak transcription	Aorta	Aorta
38	chr7:27660000-27661200	Weak transcription	Lung	lung
39	chr7:27660000-27664400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr7:27660000-27667600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr7:27660000-27669800	Weak transcription	Left Ventricle	heart
42	chr7:27660000-27680600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr7:27660200-27661000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr7:27660200-27661000	ZNF genes & repeats	Stomach Smooth Muscle	stomach
45	chr7:27660200-27661800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
46	chr7:27660200-27668000	Weak transcription	Osteobl	bone
47	chr7:27660200-27674600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr7:27660400-27661000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr7:27660400-27661000	Weak transcription	Ovary	ovary
50	chr7:27660400-27668600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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