Variant report

Variant	rs12532737
Chromosome Location	chr7:27705130-27705131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF2	chr7:27705090-27705232	HepG2	liver:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:27702844..27705316-chr7:27782990..27784557,2	K562	blood:
2	chr7:27702189..27703735-chr7:27703951..27706256,2	MCF-7	breast:
3	chr7:27699948..27706867-chr7:27775418..27784557,21	K562	blood:
4	chr7:27704178..27705871-chr7:27706001..27707559,2	MCF-7	breast:
5	chr7:27700432..27708426-chr7:27777901..27782637,20	K562	blood:
6	chr7:27702921..27706495-chr7:27708435..27711221,3	K562	blood:
7	chr7:27704274..27706195-chr7:27778944..27780462,2	MCF-7	breast:

No data

Variant related genes	Relation type
HIBADH	TF binding region
ENSG00000106052	Chromatin interaction
ENSG00000106049	Chromatin interaction
ENSG00000229893	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1000317	0.86[AMR][1000 genomes]
rs11520772	0.83[EUR][1000 genomes]
rs12155171	0.98[EUR][1000 genomes]
rs13227574	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13231645	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13236065	0.99[EUR][1000 genomes]
rs13241127	0.91[AMR][1000 genomes]
rs13247831	0.85[EUR][1000 genomes]
rs1544413	0.82[EUR][1000 genomes]
rs1544414	0.82[EUR][1000 genomes]
rs17613082	0.83[EUR][1000 genomes]
rs17613350	0.83[EUR][1000 genomes]
rs34578407	0.82[EUR][1000 genomes]
rs34594641	0.83[EUR][1000 genomes]
rs34638402	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35105727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35232956	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35536764	0.97[EUR][1000 genomes]
rs35733141	0.96[EUR][1000 genomes]
rs35771883	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35816118	0.83[AMR][1000 genomes]
rs36057260	0.83[EUR][1000 genomes]
rs36069602	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36114463	0.91[EUR][1000 genomes]
rs4391326	0.88[EUR][1000 genomes]
rs4719896	0.81[AMR][1000 genomes]
rs4719901	0.86[AMR][1000 genomes]
rs4722725	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6944455	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6968631	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6969043	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6969207	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71539525	0.86[AMR][1000 genomes]
rs71539526	0.86[AMR][1000 genomes]
rs71539527	0.92[AMR][1000 genomes]
rs71539529	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71539544	0.85[EUR][1000 genomes]
rs71555704	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12532737	HIBADH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27703200-27708200	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:27703400-27705400	Enhancers	Placenta	Placenta
3	chr7:27703400-27706200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:27703600-27708000	Weak transcription	Right Atrium	heart
5	chr7:27704200-27705200	Enhancers	K562	blood
6	chr7:27704200-27711000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:27705000-27710000	Weak transcription	HepG2	liver

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