Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11520772	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12155171	0.90[EUR][1000 genomes]
rs12532737	0.91[EUR][1000 genomes]
rs13227574	0.90[EUR][1000 genomes]
rs13231645	0.87[EUR][1000 genomes]
rs13236065	0.90[EUR][1000 genomes]
rs13247831	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1544413	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1544414	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17613082	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17613350	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34594641	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34638402	0.86[EUR][1000 genomes]
rs35105727	0.91[EUR][1000 genomes]
rs35232956	0.91[EUR][1000 genomes]
rs35536764	0.89[EUR][1000 genomes]
rs35733141	0.87[EUR][1000 genomes]
rs35771883	0.86[EUR][1000 genomes]
rs35801744	0.84[EUR][1000 genomes]
rs36057260	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36069602	0.87[EUR][1000 genomes]
rs4391326	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4722725	0.85[EUR][1000 genomes]
rs6944455	0.89[EUR][1000 genomes]
rs6968631	0.91[EUR][1000 genomes]
rs6969043	0.91[EUR][1000 genomes]
rs6969207	0.91[EUR][1000 genomes]
rs71539544	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71555704	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs36114463	HIBADH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27726200-27733000	Weak transcription	HepG2	liver
2	chr7:27726200-27733200	Weak transcription	Osteobl	bone
3	chr7:27729400-27733400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:27729600-27733400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:27729600-27742200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:27730000-27733400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:27730000-27733400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:27730600-27733400	Weak transcription	NHDF-Ad	bronchial
9	chr7:27732000-27735400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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