Variant report
| Variant | rs35232956 |
|---|---|
| Chromosome Location | chr7:27715092-27715093 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:27714729..27716414-chr7:27718592..27720447,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11520772 | 0.82[EUR][1000 genomes] |
| rs12155171 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12532737 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs13227574 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs13231645 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs13236065 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs13241127 | 0.81[AMR][1000 genomes] |
| rs13247831 | 0.84[EUR][1000 genomes] |
| rs1544413 | 0.81[EUR][1000 genomes] |
| rs1544414 | 0.81[EUR][1000 genomes] |
| rs17613082 | 0.82[EUR][1000 genomes] |
| rs17613350 | 0.82[EUR][1000 genomes] |
| rs34578407 | 0.82[EUR][1000 genomes] |
| rs34594641 | 0.82[EUR][1000 genomes] |
| rs34638402 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35105727 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs35536764 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs35733141 | 0.95[EUR][1000 genomes] |
| rs35771883 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs36057260 | 0.82[EUR][1000 genomes] |
| rs36069602 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs36114463 | 0.91[EUR][1000 genomes] |
| rs4391326 | 0.87[EUR][1000 genomes] |
| rs4722725 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6944455 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6968631 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6969043 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6969207 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs71539527 | 0.81[AMR][1000 genomes] |
| rs71539529 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs71539544 | 0.84[EUR][1000 genomes] |
| rs71555704 | 0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949025 | chr7:27578167-28075172 | Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs35232956 | HIBADH | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:27711400-27716200 | Weak transcription | NHDF-Ad | bronchial |
| 2 | chr7:27711400-27717000 | Weak transcription | K562 | blood |
