Variant report

Variant	rs13237342
Chromosome Location	chr7:146083345-146083346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:146074528..146076132-chr7:146081076..146083881,2	K562	blood:
2	chr7:146077123..146080368-chr7:146083154..146084711,3	K562	blood:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1005386	0.88[AMR][1000 genomes]
rs1005387	0.88[GIH][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap]
rs1005388	0.84[GIH][hapmap];0.85[TSI][hapmap]
rs10226754	0.81[CEU][hapmap]
rs10238194	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs10243810	1.00[CHB][hapmap]
rs10249426	1.00[CHB][hapmap]
rs10262298	1.00[CHB][hapmap]
rs10269958	0.90[CEU][hapmap]
rs10275248	0.85[CEU][hapmap]
rs10487936	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12667234	0.90[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12670728	0.89[EUR][1000 genomes]
rs12672819	0.90[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12673296	0.86[CEU][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap]
rs12703802	0.82[CEU][hapmap]
rs12703803	0.85[CEU][hapmap]
rs12703814	0.86[ASW][hapmap];0.81[CEU][hapmap];0.92[GIH][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13247443	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358078	0.85[EUR][1000 genomes]
rs1526147	0.88[CEU][hapmap]
rs1526154	0.90[CEU][hapmap]
rs1526158	0.90[CEU][hapmap];0.92[TSI][hapmap]
rs1526159	0.90[CEU][hapmap]
rs1526161	0.83[CHB][hapmap]
rs1558412	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs1639437	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs1639446	0.85[CEU][hapmap]
rs1639460	0.85[CEU][hapmap]
rs1639465	0.86[CEU][hapmap];0.89[GIH][hapmap];0.83[TSI][hapmap]
rs1639470	0.86[CEU][hapmap]
rs1639471	0.86[CEU][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs1639480	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes]
rs1639481	1.00[CHB][hapmap];0.84[CHD][hapmap]
rs1639483	0.90[CHB][hapmap]
rs1639484	1.00[CHB][hapmap]
rs1639516	0.90[CEU][hapmap]
rs17170068	0.86[MEX][hapmap]
rs1718070	0.89[CHB][hapmap]
rs1718076	1.00[CHB][hapmap]
rs1724497	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs1724506	0.84[EUR][1000 genomes]
rs1724528	0.84[CHB][hapmap]
rs2021559	0.90[CEU][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs2030846	0.81[CEU][hapmap]
rs2058375	1.00[CHB][hapmap]
rs2058376	1.00[CHB][hapmap]
rs2058377	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs2109695	0.89[EUR][1000 genomes]
rs2109696	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372492	0.89[EUR][1000 genomes]
rs2535749	0.80[EUR][1000 genomes]
rs2535750	0.86[CEU][hapmap];0.83[TSI][hapmap]
rs2535753	0.82[EUR][1000 genomes]
rs2535754	0.89[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2888335	0.90[CEU][hapmap]
rs34079621	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34086340	0.89[EUR][1000 genomes]
rs34137151	0.87[EUR][1000 genomes]
rs34199552	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34416126	0.90[EUR][1000 genomes]
rs4109977	0.95[CEU][hapmap];0.84[CHB][hapmap];0.82[EUR][1000 genomes]
rs4618611	0.90[CEU][hapmap]
rs4725691	0.93[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap]
rs4725692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4725694	0.90[CEU][hapmap]
rs4726785	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs57803192	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6464758	0.95[CEU][hapmap];0.84[CHB][hapmap];0.84[EUR][1000 genomes]
rs6464759	0.90[CEU][hapmap];0.84[CHB][hapmap];0.85[EUR][1000 genomes]
rs6951145	0.95[CEU][hapmap];0.84[CHB][hapmap];0.82[EUR][1000 genomes]
rs6955314	0.84[EUR][1000 genomes]
rs6962126	0.82[CEU][hapmap]
rs6963627	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs6978796	0.90[CEU][hapmap];0.84[CHB][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs73164014	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7776593	0.83[EUR][1000 genomes]
rs7780801	0.95[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs7781575	0.90[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs7782757	0.85[CEU][hapmap]
rs7784672	0.89[CEU][hapmap]
rs7790657	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7794014	0.85[CEU][hapmap]
rs7803018	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7803472	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs802191	0.84[CHB][hapmap]
rs802194	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs802195	0.82[EUR][1000 genomes]
rs802196	0.91[CEU][hapmap];0.84[CHB][hapmap];0.82[EUR][1000 genomes]
rs802203	0.84[CHB][hapmap]
rs9771006	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv533345	chr7:145934546-146134958	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv524528	chr7:145998111-146086322	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv889389	chr7:145998111-146121539	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv917027	chr7:146069317-146194011	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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