Variant report

Variant	rs4725691
Chromosome Location	chr7:146085835-146085836
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1005386	0.89[AMR][1000 genomes]
rs10238194	0.93[CHB][hapmap]
rs10243810	0.86[CHB][hapmap]
rs10249426	0.86[CHB][hapmap]
rs10262298	0.86[CHB][hapmap]
rs10487936	0.92[CEU][hapmap];0.93[CHB][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12667234	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12670728	0.89[EUR][1000 genomes]
rs12672819	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12703814	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13235449	0.95[AFR][1000 genomes]
rs13237342	0.93[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap]
rs13247443	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358078	0.85[EUR][1000 genomes]
rs1526159	0.85[CEU][hapmap]
rs1558412	0.80[EUR][1000 genomes]
rs1639437	0.84[EUR][1000 genomes]
rs1639480	0.92[CEU][hapmap];0.93[CHB][hapmap];0.87[EUR][1000 genomes]
rs1639481	0.93[CHB][hapmap]
rs1639484	0.86[CHB][hapmap]
rs1718076	0.86[CHB][hapmap]
rs1724497	0.80[EUR][1000 genomes]
rs1724506	0.84[EUR][1000 genomes]
rs2058375	0.86[CHB][hapmap]
rs2058376	0.86[CHB][hapmap]
rs2058377	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[EUR][1000 genomes]
rs2109695	0.89[EUR][1000 genomes]
rs2109696	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372492	0.89[EUR][1000 genomes]
rs2535749	0.80[EUR][1000 genomes]
rs2535753	0.82[EUR][1000 genomes]
rs2535754	0.83[CEU][hapmap];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34079621	0.93[CEU][hapmap];0.93[CHB][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34086340	0.89[EUR][1000 genomes]
rs34137151	0.87[EUR][1000 genomes]
rs34199552	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34416126	0.90[EUR][1000 genomes]
rs4109977	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs4725692	0.93[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap]
rs4726785	0.85[CEU][hapmap];0.92[CHB][hapmap];0.89[EUR][1000 genomes]
rs57803192	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6464758	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs6464759	0.85[EUR][1000 genomes]
rs6951145	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs6955314	0.84[EUR][1000 genomes]
rs6963627	0.93[CHB][hapmap]
rs6978796	0.85[EUR][1000 genomes]
rs73164014	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7776593	0.83[EUR][1000 genomes]
rs7780801	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs7790657	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7803018	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7803472	0.84[EUR][1000 genomes]
rs802194	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs802195	0.82[EUR][1000 genomes]
rs802196	0.86[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv533345	chr7:145934546-146134958	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv524528	chr7:145998111-146086322	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv889389	chr7:145998111-146121539	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv917027	chr7:146069317-146194011	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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