Variant report

Variant	rs13241077
Chromosome Location	chr7:96550458-96550459
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10953197	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11762340	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12154321	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1403183	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1522538	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1823421	0.86[ASN][1000 genomes]
rs1823422	0.89[ASN][1000 genomes]
rs1823423	0.89[ASN][1000 genomes]
rs2686924	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4729320	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4729321	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6959570	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607874	chr7:96543340-96550696	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96549800-96551200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:96549800-96551200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:96550000-96551000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:96550000-96551200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:96550000-96551400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:96550000-96551400	Enhancers	NHEK	skin
7	chr7:96550000-96551600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:96550200-96550600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr7:96550200-96550600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:96550200-96551000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:96550200-96551200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:96550200-96551400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:96550400-96551000	Enhancers	Brain Germinal Matrix	brain
14	chr7:96550400-96551200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:96550400-96551200	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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