Variant report

Variant	rs6959570
Chromosome Location	chr7:96534000-96534001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10953197	0.86[ASN][1000 genomes]
rs11762340	0.85[ASN][1000 genomes]
rs12154321	0.86[ASN][1000 genomes]
rs12537923	0.82[EUR][1000 genomes]
rs12540421	0.82[EUR][1000 genomes]
rs12540422	0.82[EUR][1000 genomes]
rs13241077	0.90[ASN][1000 genomes]
rs1375671	0.82[EUR][1000 genomes]
rs1375672	0.82[EUR][1000 genomes]
rs1403183	0.85[ASN][1000 genomes]
rs1522538	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs16869160	0.81[EUR][1000 genomes]
rs17167890	0.81[EUR][1000 genomes]
rs1823421	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1823422	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1823423	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs193268	0.81[EUR][1000 genomes]
rs2394554	0.82[EUR][1000 genomes]
rs2686924	0.90[ASN][1000 genomes]
rs2948249	0.82[EUR][1000 genomes]
rs352664	0.82[EUR][1000 genomes]
rs352667	0.82[EUR][1000 genomes]
rs4727350	0.82[EUR][1000 genomes]
rs4727351	0.82[EUR][1000 genomes]
rs4729315	0.82[EUR][1000 genomes]
rs4729316	0.82[EUR][1000 genomes]
rs4729317	0.82[EUR][1000 genomes]
rs4729318	0.82[EUR][1000 genomes]
rs4729320	0.89[ASN][1000 genomes]
rs4729321	0.88[ASN][1000 genomes]
rs6465558	0.81[EUR][1000 genomes]
rs6465559	0.81[EUR][1000 genomes]
rs6465560	0.81[EUR][1000 genomes]
rs6465561	0.81[EUR][1000 genomes]
rs6465562	0.82[EUR][1000 genomes]
rs6465565	0.82[EUR][1000 genomes]
rs6950597	0.82[EUR][1000 genomes]
rs6955035	0.82[EUR][1000 genomes]
rs6955143	0.82[EUR][1000 genomes]
rs6955254	0.82[EUR][1000 genomes]
rs6955262	0.82[EUR][1000 genomes]
rs6956115	0.82[EUR][1000 genomes]
rs6960604	0.82[EUR][1000 genomes]
rs6960757	0.82[EUR][1000 genomes]
rs6972627	0.81[EUR][1000 genomes]
rs7792791	0.82[EUR][1000 genomes]
rs7803481	0.81[EUR][1000 genomes]
rs7809288	0.82[EUR][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs6959570	PVRIG	cis	parietal	SCAN
rs6959570	ZSCAN21	cis	cerebellum	SCAN
rs6959570	C7orf61	cis	cerebellum	SCAN
rs6959570	COL1A2	cis	parietal	SCAN
rs6959570	GPC2	cis	cerebellum	SCAN
rs6959570	PON1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96533000-96534000	Enhancers	NHEK	skin
2	chr7:96533200-96534000	Enhancers	HMEC	breast

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