Variant report

Variant	rs13241885
Chromosome Location	chr7:18905400-18905401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12699997	1.00[AMR][1000 genomes]
rs12700004	0.85[AMR][1000 genomes]
rs12700005	0.85[AMR][1000 genomes]
rs13234557	0.85[AMR][1000 genomes]
rs13238305	0.85[AMR][1000 genomes]
rs13238702	1.00[AMR][1000 genomes]
rs13239170	1.00[AMR][1000 genomes]
rs16872130	0.83[AMR][1000 genomes]
rs17140149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140158	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17140170	1.00[AMR][1000 genomes]
rs17140227	1.00[AMR][1000 genomes]
rs34018423	1.00[AMR][1000 genomes]
rs34098679	1.00[AMR][1000 genomes]
rs34302776	1.00[AMR][1000 genomes]
rs34790980	1.00[AMR][1000 genomes]
rs34896059	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35048169	1.00[AMR][1000 genomes]
rs35057182	1.00[AMR][1000 genomes]
rs35074349	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35334608	1.00[AMR][1000 genomes]
rs35692319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4445123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71524253	1.00[AMR][1000 genomes]
rs71524257	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv523497	chr7:18896011-18959381	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18901600-18905600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr7:18901600-18905800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:18901800-18905600	Weak transcription	Osteobl	bone
4	chr7:18903000-18940000	Weak transcription	Aorta	Aorta
5	chr7:18903800-18907400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:18904600-18906000	Enhancers	Right Atrium	heart
7	chr7:18904800-18907000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:18904800-18907400	Enhancers	Adipose Nuclei	Adipose
9	chr7:18905000-18907000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:18905200-18907000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:18905200-18908000	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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