Variant report

Variant	rs13238305
Chromosome Location	chr7:18911776-18911777
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10235695	0.87[EUR][1000 genomes]
rs10252839	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10253169	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10266268	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10268296	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10268558	0.87[EUR][1000 genomes]
rs10277107	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10281987	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10282165	0.87[EUR][1000 genomes]
rs10441036	0.87[EUR][1000 genomes]
rs10486312	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12699997	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12700004	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12700005	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12700006	0.87[EUR][1000 genomes]
rs12700009	0.87[EUR][1000 genomes]
rs12700011	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12700012	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13221164	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13224263	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13224833	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13234557	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13235810	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13237090	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13238702	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13239170	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13241140	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13241885	0.85[AMR][1000 genomes]
rs13438582	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16872130	0.87[EUR][1000 genomes]
rs16872139	0.89[YRI][hapmap]
rs17140149	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17140158	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17140166	0.89[YRI][hapmap]
rs17140170	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17140193	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17140198	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17140227	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34018423	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34098679	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34302776	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34707237	0.89[EUR][1000 genomes]
rs34790980	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34896059	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35024729	0.89[EUR][1000 genomes]
rs35048169	0.85[AMR][1000 genomes]
rs35057182	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35074349	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35334608	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35692319	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4445123	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71524253	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71524257	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7789261	0.89[EUR][1000 genomes]
rs7808375	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7809412	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7811828	1.00[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv523497	chr7:18896011-18959381	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18903000-18940000	Weak transcription	Aorta	Aorta
2	chr7:18906200-18929200	Weak transcription	Left Ventricle	heart
3	chr7:18908000-18913800	Weak transcription	NHDF-Ad	bronchial

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