Variant report

Variant	rs16872130
Chromosome Location	chr7:18872332-18872333
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10228341	0.87[EUR][1000 genomes]
rs10235695	1.00[EUR][1000 genomes]
rs10252839	1.00[EUR][1000 genomes]
rs10253169	1.00[EUR][1000 genomes]
rs10265632	0.87[EUR][1000 genomes]
rs10266268	1.00[EUR][1000 genomes]
rs10268296	1.00[EUR][1000 genomes]
rs10268558	1.00[EUR][1000 genomes]
rs10277107	1.00[EUR][1000 genomes]
rs10281987	1.00[EUR][1000 genomes]
rs10282165	1.00[EUR][1000 genomes]
rs10441036	1.00[EUR][1000 genomes]
rs10441039	0.87[EUR][1000 genomes]
rs10486312	1.00[EUR][1000 genomes]
rs12113191	0.87[EUR][1000 genomes]
rs12699997	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12700004	0.87[EUR][1000 genomes]
rs12700005	0.87[EUR][1000 genomes]
rs12700006	1.00[EUR][1000 genomes]
rs12700009	1.00[EUR][1000 genomes]
rs12700011	1.00[EUR][1000 genomes]
rs12700012	1.00[EUR][1000 genomes]
rs13221164	1.00[EUR][1000 genomes]
rs13224263	1.00[EUR][1000 genomes]
rs13224833	1.00[EUR][1000 genomes]
rs13234557	0.87[EUR][1000 genomes]
rs13235810	1.00[EUR][1000 genomes]
rs13237090	1.00[EUR][1000 genomes]
rs13238305	0.87[EUR][1000 genomes]
rs13238702	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13239170	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13241140	1.00[EUR][1000 genomes]
rs13241885	0.83[AMR][1000 genomes]
rs13438582	1.00[EUR][1000 genomes]
rs17140149	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17140158	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17140170	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17140193	1.00[EUR][1000 genomes]
rs17140198	1.00[EUR][1000 genomes]
rs17140227	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34018423	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34098679	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34302776	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34790980	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34896059	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35048169	0.83[AMR][1000 genomes]
rs35057182	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35074349	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35334608	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35692319	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4445123	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71524253	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71524257	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7808375	1.00[EUR][1000 genomes]
rs7809412	1.00[EUR][1000 genomes]
rs7811828	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18854000-18874400	Weak transcription	Aorta	Aorta
2	chr7:18866800-18885200	Weak transcription	Primary B cells from cord blood	blood
3	chr7:18867200-18882400	Weak transcription	Left Ventricle	heart
4	chr7:18868200-18879400	Weak transcription	HSMMtube	muscle
5	chr7:18868800-18887400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:18869600-18874400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:18869800-18874200	Weak transcription	Fetal Lung	lung
8	chr7:18870000-18874200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:18870000-18874400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:18870000-18874400	Weak transcription	Fetal Stomach	stomach
11	chr7:18870000-18874600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:18870000-18874600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:18870600-18874200	Weak transcription	Fetal Kidney	kidney
14	chr7:18871600-18874400	Weak transcription	Fetal Muscle Leg	muscle
15	chr7:18871800-18874200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:18872000-18874200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:18872000-18874400	Weak transcription	Adipose Nuclei	Adipose
18	chr7:18872000-18874800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:18872000-18874800	Weak transcription	NHDF-Ad	bronchial

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