Variant report

Variant	rs1324211
Chromosome Location	chr9:79178079-79178080
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1329019	0.85[AFR][1000 genomes]
rs17062726	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104344	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4744797	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744798	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4745562	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv893480	chr9:79115844-79222584	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79171400-79179800	Enhancers	Osteobl	bone
2	chr9:79171600-79178400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:79172000-79178400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:79172000-79179800	Enhancers	NHDF-Ad	bronchial
5	chr9:79172200-79179600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:79172400-79178400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:79172600-79179400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr9:79173400-79179200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr9:79173400-79179400	Enhancers	Primary B cells from peripheral blood	blood
10	chr9:79174200-79178200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:79174200-79178400	Enhancers	HMEC	breast
12	chr9:79174400-79178200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:79174800-79178400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:79175600-79178400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:79176000-79179800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr9:79176000-79186400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:79176400-79178200	Enhancers	Primary hematopoietic stem cells	blood
18	chr9:79176400-79178600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:79176600-79186400	Weak transcription	Brain Anterior Caudate	brain
20	chr9:79176800-79179200	Weak transcription	NHLF	lung
21	chr9:79177000-79178800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:79177400-79179200	Enhancers	Primary B cells from cord blood	blood
23	chr9:79177600-79178200	Enhancers	Fetal Intestine Small	intestine
24	chr9:79177800-79178400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr9:79177800-79179000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:79177800-79179600	Enhancers	GM12878-XiMat	blood
27	chr9:79177800-79186600	Weak transcription	HSMMtube	muscle
28	chr9:79178000-79178200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr9:79178000-79178200	Enhancers	HSMM	muscle
30	chr9:79178000-79178400	Enhancers	Placenta Amnion	Placenta Amnion
31	chr9:79178000-79179000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:79178000-79179400	Weak transcription	NH-A	brain
33	chr9:79178000-79179600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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