Variant report

Variant	rs17062726
Chromosome Location	chr9:79173492-79173493
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79172789..79176579-chr9:79178896..79182054,3	MCF-7	breast:
2	chr9:79163820..79166621-chr9:79172765..79175104,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000219149	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1324211	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104344	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4237274	0.84[AFR][1000 genomes]
rs4744797	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744798	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4745562	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv893480	chr9:79115844-79222584	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79137200-79173600	Weak transcription	Primary B cells from cord blood	blood
2	chr9:79165600-79175600	Weak transcription	Gastric	stomach
3	chr9:79168800-79175600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:79168800-79175600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:79171200-79175600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:79171400-79179800	Enhancers	Osteobl	bone
7	chr9:79171600-79173600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:79171600-79174800	Enhancers	Fetal Brain Male	brain
9	chr9:79171600-79177800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:79171600-79178400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:79171800-79177400	Weak transcription	HSMMtube	muscle
12	chr9:79172000-79178400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:79172000-79179800	Enhancers	NHDF-Ad	bronchial
14	chr9:79172200-79173800	Enhancers	HMEC	breast
15	chr9:79172200-79179600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:79172400-79173600	Enhancers	Fetal Brain Female	brain
17	chr9:79172400-79173600	Enhancers	HSMM	muscle
18	chr9:79172400-79173800	Enhancers	NHLF	lung
19	chr9:79172400-79177800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:79172400-79178400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:79172600-79173600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:79172600-79173600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr9:79172600-79173600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr9:79172600-79174400	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr9:79172600-79179400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr9:79172800-79177600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr9:79173200-79173800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:79173400-79174800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:79173400-79175000	Weak transcription	NH-A	brain
30	chr9:79173400-79179200	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr9:79173400-79179400	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links