Variant report

Variant	rs4745562
Chromosome Location	chr9:79191892-79191893
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79186002..79188857-chr9:79189494..79193893,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241781	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1324211	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17062726	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2104344	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4237274	0.87[AFR][1000 genomes]
rs4744797	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4744798	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv893480	chr9:79115844-79222584	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79187000-79192200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr9:79187000-79193600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:79187000-79195200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:79187000-79200800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr9:79188000-79197000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr9:79188600-79192600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:79188800-79197000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr9:79189000-79195800	Enhancers	Primary hematopoietic stem cells	blood
9	chr9:79189200-79198200	Weak transcription	Gastric	stomach
10	chr9:79189600-79193800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:79189800-79192400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:79189800-79192400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr9:79189800-79199400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr9:79189800-79200400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:79190200-79192200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr9:79190400-79193000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:79190600-79192400	Enhancers	Primary T cells fromperipheralblood	blood
18	chr9:79190600-79192400	Enhancers	Osteobl	bone
19	chr9:79190600-79192600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:79190600-79193600	Enhancers	HSMM	muscle
21	chr9:79190800-79193000	Enhancers	NH-A	brain
22	chr9:79191000-79192200	Weak transcription	Small Intestine	intestine
23	chr9:79191200-79193000	Enhancers	HMEC	breast
24	chr9:79191200-79193200	Enhancers	Primary B cells from peripheral blood	blood
25	chr9:79191200-79193600	Enhancers	Fetal Thymus	thymus
26	chr9:79191400-79192400	Enhancers	NHDF-Ad	bronchial
27	chr9:79191600-79192000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr9:79191600-79192200	Weak transcription	Stomach Mucosa	stomach
29	chr9:79191600-79196600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr9:79191800-79192200	Weak transcription	Fetal Intestine Large	intestine
31	chr9:79191800-79192400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr9:79191800-79192600	Enhancers	Primary B cells from cord blood	blood
33	chr9:79191800-79192800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr9:79191800-79193000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr9:79191800-79193000	Weak transcription	Lung	lung
36	chr9:79191800-79193200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr9:79191800-79193200	Enhancers	GM12878-XiMat	blood
38	chr9:79191800-79194800	Enhancers	Muscle Satellite Cultured Cells	--
39	chr9:79191800-79195000	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr9:79191800-79195000	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr9:79191800-79196400	Weak transcription	Fetal Intestine Small	intestine
42	chr9:79191800-79196800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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