Variant report

Variant	rs13246951
Chromosome Location	chr7:116911091-116911092
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115890993-115892266..7:116894301-116914960	GM12878	blood:
2	7:116754962-116765597..7:116894301-116914960	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000004866	Chromatin interaction
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10226864	0.89[ASN][1000 genomes]
rs10235236	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10255896	0.89[ASN][1000 genomes]
rs10256129	0.89[ASN][1000 genomes]
rs10271623	0.89[ASN][1000 genomes]
rs10280067	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10953839	0.85[ASN][1000 genomes]
rs11760825	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11981089	0.86[ASN][1000 genomes]
rs12706145	0.82[ASN][1000 genomes]
rs13224335	0.86[ASN][1000 genomes]
rs1468655	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1860698	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2402176	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs38902	0.84[ASN][1000 genomes]
rs38909	0.86[ASN][1000 genomes]
rs38916	0.84[ASN][1000 genomes]
rs4730773	0.82[ASN][1000 genomes]
rs6466605	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6466606	0.89[ASN][1000 genomes]
rs6466607	0.89[ASN][1000 genomes]
rs6942558	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6944152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6947786	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6958283	0.86[ASN][1000 genomes]
rs6968768	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6974937	0.87[ASN][1000 genomes]
rs6975501	0.87[ASN][1000 genomes]
rs6979800	0.81[AMR][1000 genomes]
rs718738	0.84[ASN][1000 genomes]
rs7776963	0.87[ASN][1000 genomes]
rs7795841	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7802930	0.88[ASN][1000 genomes]
rs9691008	0.82[ASN][1000 genomes]
rs9692365	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116909200-116911200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:116909200-116911200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:116909200-116912000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:116909600-116920400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:116910000-116911200	Enhancers	Osteobl	bone
6	chr7:116910400-116911200	Enhancers	NHLF	lung
7	chr7:116910400-116913000	Enhancers	NHDF-Ad	bronchial
8	chr7:116910600-116911200	Enhancers	NHEK	skin
9	chr7:116910600-116912400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:116910600-116912400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:116910800-116911200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:116910800-116912000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:116910800-116912800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:116910800-116915000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:116911000-116911800	Enhancers	Hela-S3	cervix
16	chr7:116911000-116913200	Weak transcription	HMEC	breast
17	chr7:116911000-116913600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links