Variant report

Variant	rs6947786
Chromosome Location	chr7:116902698-116902699
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:116900629..116902783-chr7:116915433..116917547,2	K562	blood:
2	chr7:116894506..116897239-chr7:116900320..116902736,2	K562	blood:
3	7:115890993-115892266..7:116894301-116914960	GM12878	blood:
4	7:116754962-116765597..7:116894301-116914960	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction
ENSG00000004866	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10226864	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10235236	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10254103	0.86[ASN][1000 genomes]
rs10255896	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10256129	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10271623	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10280067	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10953839	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11760825	0.92[EUR][1000 genomes]
rs11981089	0.97[ASN][1000 genomes]
rs13224335	0.97[ASN][1000 genomes]
rs13246951	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1468655	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1860698	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2402176	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs38902	0.95[ASN][1000 genomes]
rs38909	0.97[ASN][1000 genomes]
rs38916	0.95[ASN][1000 genomes]
rs6466605	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6466606	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6466607	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6942558	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6944152	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6958283	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6965467	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6968768	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6974937	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6975501	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6979800	0.82[AMR][1000 genomes]
rs718738	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs739693	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7776963	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7795841	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7802930	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116900400-116902800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:116900400-116903400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:116900600-116902800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:116900600-116903600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:116900800-116902800	Weak transcription	HMEC	breast
6	chr7:116900800-116904600	Weak transcription	NHDF-Ad	bronchial
7	chr7:116902200-116904000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:116902200-116904000	Enhancers	NHEK	skin

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