Variant report

Variant	rs11981089
Chromosome Location	chr7:116904228-116904229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115890993-115892266..7:116894301-116914960	GM12878	blood:
2	7:116754962-116765597..7:116894301-116914960	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000004866	Chromatin interaction
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10226248	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10226864	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10235236	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10245615	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10254103	0.85[ASN][1000 genomes]
rs10255896	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10256129	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10271623	0.97[ASN][1000 genomes]
rs10280067	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10953839	0.95[ASN][1000 genomes]
rs12706145	0.96[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13224335	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13227482	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13246951	0.86[ASN][1000 genomes]
rs1468655	0.97[ASN][1000 genomes]
rs1860698	0.97[ASN][1000 genomes]
rs2402176	0.90[ASN][1000 genomes]
rs34911130	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs38902	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs38904	0.87[TSI][hapmap]
rs38905	0.87[TSI][hapmap]
rs38909	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38911	0.87[TSI][hapmap]
rs38916	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4727845	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4730773	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4730775	0.92[CEU][hapmap];0.82[CHD][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs6466605	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6466606	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6466607	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6942558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6944152	0.86[ASN][1000 genomes]
rs6946781	0.86[CHB][hapmap]
rs6947786	0.97[ASN][1000 genomes]
rs6950776	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6951125	0.92[CEU][hapmap];0.87[CHD][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6958283	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6965467	0.83[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs6968768	0.97[ASN][1000 genomes]
rs6974937	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6975501	0.97[ASN][1000 genomes]
rs718738	0.94[ASN][1000 genomes]
rs739693	0.85[ASN][1000 genomes]
rs7457422	0.92[CHB][hapmap];0.95[JPT][hapmap]
rs7776963	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7795841	0.86[ASN][1000 genomes]
rs7802930	0.94[ASN][1000 genomes]
rs887573	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9691008	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9692365	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116900800-116904600	Weak transcription	NHDF-Ad	bronchial
2	chr7:116902800-116904400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:116903400-116909200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:116903600-116909000	Weak transcription	HMEC	breast
5	chr7:116904000-116909200	Weak transcription	Hela-S3	cervix
6	chr7:116904000-116909200	Weak transcription	NHEK	skin
7	chr7:116904200-116904400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:116904200-116909200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:116904200-116909200	Weak transcription	HUVEC	blood vessel

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